diff --git a/scripts/parse_commands.py b/scripts/parse_commands.py
index 401b5936ea9b8e80b5cd4d9a8110d6d6b2a0f2d1..3a5fb6c1afbda1a07593b1c5a3e1c7867490fe00 100644
--- a/scripts/parse_commands.py
+++ b/scripts/parse_commands.py
@@ -149,10 +149,11 @@ if __name__ == '__main__':
                     diff_cmds.append('$DIFF_BIN '+output.replace(CUT_PATH + r'/dut',REF_PATH + r'/ref')+' '+output+' >> $LOG_FILE 2>&1')
                 outfile.write(('; ').join(diff_cmds))
             if isar_out and "cut" in isar_out.group(1):
-                outfile.write('$DIFF_BIN '+isar_out.group(1).replace(CUT_PATH + r'/split_rendering/cut',REF_PATH + r'/split_rendering/ref')+' '+isar_out.group(1)+' >> $LOG_FILE 2>&1\n')   
-            if isar_md_out and "cut" in isar_md_out.group(1):
-                outfile.write('$DIFF_BIN '+isar_md_out.group(1).replace(CUT_PATH + r'/split_rendering/cut',REF_PATH + r'/split_rendering/ref')+' '+isar_md_out.group(1)+' >> $LOG_FILE 2>&1\n')              
-                
+                outfile.write('$DIFF_BIN '+isar_out.group(1).replace(CUT_PATH + r'/split_rendering/cut',REF_PATH + r'/split_rendering/ref')+' '+isar_out.group(1)+' >> $LOG_FILE 2>&1')
+                if isar_md_out and "cut" in isar_md_out.group(1):
+                    outfile.write('; $DIFF_BIN '+isar_md_out.group(1).replace(CUT_PATH + r'/split_rendering/cut',REF_PATH + r'/split_rendering/ref')+' '+isar_md_out.group(1)+' >> $LOG_FILE 2>&1\n')
+                else:
+                    outfile.write('\n')
             outfile.write('\n\n')
         with open('scripts/script_footer.txt','r') as footer:
             outfile_dec.write(footer.read())