write out patched config

    name_to_full = {Path(full_file).name: full_file for full_file in items_list}

    if set(name_to_full.keys()) != set(concatenation_order):

        raise ValueError("Items given in concatenation_order are not identical to what was found inthe input folder")

        raise ValueError(f"Items given in concatenation_order {concatenation_order} are not identical to what was found in the input folder {name_to_full.keys()}")

    ordered_full_files = [

        name_to_full[name] for name in concatenation_order if name in name_to_full

    # patch concatenation order

    if config.preprocessing_2.get("concatenate_input", None) is not None:

        config.preprocessing_2["concatenation_order"] = sorted(input_filenames)

        config.to_file(cfg)

    generate_test(args)