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[CI] Potential fix for runner error caused by deleted branches

norvell requested to merge ci/add-git-prune-when-fetching-scripts into main

When testing new CI features, it is useful to set a new scripts branch to test them. However, when the temporary branch is deleted this causes an error on the runner. It was solved locally by adding a git prune, so this MR just adds this command to the update scripts anchor. It cannot harm to do it, so it should be safe to merge even if it should not solve the problem.

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